• File: seedszro.bug
# SEEDS example with random effects constrained to sum to zero
model {
   alpha0 ~ dnorm(0.0,1.0E-6);  # intercept
   alpha1 ~ dnorm(0.0,1.0E-6);  # seed coeff
   alpha2 ~ dnorm(0.0,1.0E-6);  # extract coeff
   alpha12 ~ dnorm(0.0,1.0E-6);
   tau ~ dgamma(1.0E-3,1.0E-3);    # 1/sigma^2
   for (i in 1:N) {
      c[i] ~ dnorm(0.0,tau);
      b[i] <- c[i] - mean(c[]);    #  make sure b's add to zero
      logit(p[i]) <- alpha0 + alpha1*x1[i] + alpha2*x2[i] +
                     alpha12*x1[i]*x2[i] + b[i];
      r[i] ~ dbin(p[i],n[i]);
   }
   sigma <- 1.0/sqrt(tau);
}